A Probabilistic Model for the Extraction of Expression Levels from Oligonucleotide Arrays

[edit]

Marta Milo, University of Sheffield
Alireza Fazeli
Mahesan Niranjan, University of Southampton
Neil D. Lawrence, University of Sheffield

Biochemical Transations 31, pp 1510-1512

Related Material

Abstract

In this work we present a probabilistic model to estimate summaries of Affymetrix GeneChip probe level data. Comparisons with two different models were made both on a publicly available dataset and on a study performed in our laboratory, showing that our model performs better for consistency of fold change.


@Article{milo-probabilistic03,
  title = 	 {A Probabilistic Model for the Extraction of Expression Levels from Oligonucleotide Arrays},
  journal =  	 {Biochemical Transations},
  author = 	 {Marta Milo and Alireza Fazeli and Mahesan Niranjan and Neil D. Lawrence},
  pages = 	 {1510},
  year = 	 {2003},
  volume = 	 {31},
  number =       {6},
  month = 	 {00},
  edit = 	 {https://github.com/lawrennd//publications/edit/gh-pages/_posts/2003-12-01-milo-probabilistic03.md},
  url =  	 {http://inverseprobability.com/publications/milo-probabilistic03.html},
  abstract = 	 {In this work we present a probabilistic model to estimate summaries of Affymetrix GeneChip probe level data. Comparisons with two different models were made both on a publicly available dataset and on a study performed in our laboratory, showing that our model performs better for consistency of fold change.},
  key = 	 {Milo-probabilistic03},
  linkpdf = 	 {ftp://ftp.dcs.shef.ac.uk/home/neil/probabilisticOligo.pdf},
  group = 	 {shefml,mig,puma}
 

}
%T A Probabilistic Model for the Extraction of Expression Levels from Oligonucleotide Arrays
%A Marta Milo and Alireza Fazeli and Mahesan Niranjan and Neil D. Lawrence
%B 
%C Biochemical Transations
%D 
%F milo-probabilistic03
%J Biochemical Transations	
%P 1510--1512
%R 
%U http://inverseprobability.com/publications/milo-probabilistic03.html
%V 31
%N 6
%X In this work we present a probabilistic model to estimate summaries of Affymetrix GeneChip probe level data. Comparisons with two different models were made both on a publicly available dataset and on a study performed in our laboratory, showing that our model performs better for consistency of fold change.
TY  - CPAPER
TI  - A Probabilistic Model for the Extraction of Expression Levels from Oligonucleotide Arrays
AU  - Marta Milo
AU  - Alireza Fazeli
AU  - Mahesan Niranjan
AU  - Neil D. Lawrence
PY  - 2003/12/01
DA  - 2003/12/01	
ID  - milo-probabilistic03	
SP  - 1510
EP  - 1512
L1  - ftp://ftp.dcs.shef.ac.uk/home/neil/probabilisticOligo.pdf
UR  - http://inverseprobability.com/publications/milo-probabilistic03.html
AB  - In this work we present a probabilistic model to estimate summaries of Affymetrix GeneChip probe level data. Comparisons with two different models were made both on a publicly available dataset and on a study performed in our laboratory, showing that our model performs better for consistency of fold change.
ER  -

Milo, M., Fazeli, A., Niranjan, M. & Lawrence, N.D.. (2003). A Probabilistic Model for the Extraction of Expression Levels from Oligonucleotide Arrays. Biochemical Transations 31(6):1510-1512