\[\newcommand{\tk}[1]{} %\newcommand{\tk}[1]{\textbf{TK}: #1} \newcommand{\Amatrix}{\mathbf{A}} \newcommand{\KL}[2]{\text{KL}\left( #1\,\|\,#2 \right)} \newcommand{\Kaast}{\kernelMatrix_{\mathbf{ \ast}\mathbf{ \ast}}} \newcommand{\Kastu}{\kernelMatrix_{\mathbf{ \ast} \inducingVector}} \newcommand{\Kff}{\kernelMatrix_{\mappingFunctionVector \mappingFunctionVector}} \newcommand{\Kfu}{\kernelMatrix_{\mappingFunctionVector \inducingVector}} \newcommand{\Kuast}{\kernelMatrix_{\inducingVector \bf\ast}} \newcommand{\Kuf}{\kernelMatrix_{\inducingVector \mappingFunctionVector}} \newcommand{\Kuu}{\kernelMatrix_{\inducingVector \inducingVector}} \newcommand{\Kuui}{\Kuu^{-1}} \newcommand{\Qaast}{\mathbf{Q}_{\bf \ast \ast}} \newcommand{\Qastf}{\mathbf{Q}_{\ast \mappingFunction}} \newcommand{\Qfast}{\mathbf{Q}_{\mappingFunctionVector \bf \ast}} \newcommand{\Qff}{\mathbf{Q}_{\mappingFunctionVector \mappingFunctionVector}} \newcommand{\aMatrix}{\mathbf{A}} \newcommand{\aScalar}{a} \newcommand{\aVector}{\mathbf{a}} \newcommand{\acceleration}{a} \newcommand{\bMatrix}{\mathbf{B}} \newcommand{\bScalar}{b} \newcommand{\bVector}{\mathbf{b}} \newcommand{\basisFunc}{\phi} \newcommand{\basisFuncVector}{\boldsymbol{ \basisFunc}} \newcommand{\basisFunction}{\phi} \newcommand{\basisLocation}{\mu} \newcommand{\basisMatrix}{\boldsymbol{ \Phi}} \newcommand{\basisScalar}{\basisFunction} \newcommand{\basisVector}{\boldsymbol{ \basisFunction}} \newcommand{\activationFunction}{\phi} \newcommand{\activationMatrix}{\boldsymbol{ \Phi}} \newcommand{\activationScalar}{\basisFunction} \newcommand{\activationVector}{\boldsymbol{ \basisFunction}} \newcommand{\bigO}{\mathcal{O}} \newcommand{\binomProb}{\pi} \newcommand{\cMatrix}{\mathbf{C}} \newcommand{\cbasisMatrix}{\hat{\boldsymbol{ \Phi}}} \newcommand{\cdataMatrix}{\hat{\dataMatrix}} \newcommand{\cdataScalar}{\hat{\dataScalar}} \newcommand{\cdataVector}{\hat{\dataVector}} \newcommand{\centeredKernelMatrix}{\mathbf{ \MakeUppercase{\centeredKernelScalar}}} \newcommand{\centeredKernelScalar}{b} \newcommand{\centeredKernelVector}{\centeredKernelScalar} \newcommand{\centeringMatrix}{\mathbf{H}} \newcommand{\chiSquaredDist}[2]{\chi_{#1}^{2}\left(#2\right)} \newcommand{\chiSquaredSamp}[1]{\chi_{#1}^{2}} \newcommand{\conditionalCovariance}{\boldsymbol{ \Sigma}} \newcommand{\coregionalizationMatrix}{\mathbf{B}} \newcommand{\coregionalizationScalar}{b} \newcommand{\coregionalizationVector}{\mathbf{ \coregionalizationScalar}} \newcommand{\covDist}[2]{\text{cov}_{#2}\left(#1\right)} \newcommand{\covSamp}[1]{\text{cov}\left(#1\right)} \newcommand{\covarianceScalar}{c} \newcommand{\covarianceVector}{\mathbf{ \covarianceScalar}} \newcommand{\covarianceMatrix}{\mathbf{C}} \newcommand{\covarianceMatrixTwo}{\boldsymbol{ \Sigma}} \newcommand{\croupierScalar}{s} \newcommand{\croupierVector}{\mathbf{ \croupierScalar}} \newcommand{\croupierMatrix}{\mathbf{ \MakeUppercase{\croupierScalar}}} \newcommand{\dataDim}{p} \newcommand{\dataIndex}{i} \newcommand{\dataIndexTwo}{j} \newcommand{\dataMatrix}{\mathbf{Y}} \newcommand{\dataScalar}{y} \newcommand{\dataSet}{\mathcal{D}} \newcommand{\dataStd}{\sigma} \newcommand{\dataVector}{\mathbf{ \dataScalar}} \newcommand{\decayRate}{d} \newcommand{\degreeMatrix}{\mathbf{ \MakeUppercase{\degreeScalar}}} \newcommand{\degreeScalar}{d} \newcommand{\degreeVector}{\mathbf{ \degreeScalar}} % Already defined by latex %\newcommand{\det}[1]{\left|#1\right|} \newcommand{\diag}[1]{\text{diag}\left(#1\right)} \newcommand{\diagonalMatrix}{\mathbf{D}} \newcommand{\diff}[2]{\frac{\text{d}#1}{\text{d}#2}} \newcommand{\diffTwo}[2]{\frac{\text{d}^2#1}{\text{d}#2^2}} \newcommand{\displacement}{x} \newcommand{\displacementVector}{\textbf{\displacement}} \newcommand{\distanceMatrix}{\mathbf{ \MakeUppercase{\distanceScalar}}} \newcommand{\distanceScalar}{d} \newcommand{\distanceVector}{\mathbf{ \distanceScalar}} \newcommand{\eigenvaltwo}{\ell} \newcommand{\eigenvaltwoMatrix}{\mathbf{L}} \newcommand{\eigenvaltwoVector}{\mathbf{l}} \newcommand{\eigenvalue}{\lambda} \newcommand{\eigenvalueMatrix}{\boldsymbol{ \Lambda}} \newcommand{\eigenvalueVector}{\boldsymbol{ \lambda}} \newcommand{\eigenvector}{\mathbf{ \eigenvectorScalar}} \newcommand{\eigenvectorMatrix}{\mathbf{U}} \newcommand{\eigenvectorScalar}{u} \newcommand{\eigenvectwo}{\mathbf{v}} \newcommand{\eigenvectwoMatrix}{\mathbf{V}} \newcommand{\eigenvectwoScalar}{v} \newcommand{\entropy}[1]{\mathcal{H}\left(#1\right)} \newcommand{\errorFunction}{E} \newcommand{\expDist}[2]{\left<#1\right>_{#2}} \newcommand{\expSamp}[1]{\left<#1\right>} \newcommand{\expectation}[1]{\left\langle #1 \right\rangle } \newcommand{\expectationDist}[2]{\left\langle #1 \right\rangle _{#2}} \newcommand{\expectedDistanceMatrix}{\mathcal{D}} \newcommand{\eye}{\mathbf{I}} \newcommand{\fantasyDim}{r} \newcommand{\fantasyMatrix}{\mathbf{ \MakeUppercase{\fantasyScalar}}} \newcommand{\fantasyScalar}{z} \newcommand{\fantasyVector}{\mathbf{ \fantasyScalar}} \newcommand{\featureStd}{\varsigma} \newcommand{\gammaCdf}[3]{\mathcal{GAMMA CDF}\left(#1|#2,#3\right)} \newcommand{\gammaDist}[3]{\mathcal{G}\left(#1|#2,#3\right)} \newcommand{\gammaSamp}[2]{\mathcal{G}\left(#1,#2\right)} \newcommand{\gaussianDist}[3]{\mathcal{N}\left(#1|#2,#3\right)} \newcommand{\gaussianSamp}[2]{\mathcal{N}\left(#1,#2\right)} \newcommand{\given}{|} \newcommand{\half}{\frac{1}{2}} \newcommand{\heaviside}{H} \newcommand{\hiddenMatrix}{\mathbf{ \MakeUppercase{\hiddenScalar}}} \newcommand{\hiddenScalar}{h} \newcommand{\hiddenVector}{\mathbf{ \hiddenScalar}} \newcommand{\identityMatrix}{\eye} \newcommand{\inducingInputScalar}{z} \newcommand{\inducingInputVector}{\mathbf{ \inducingInputScalar}} \newcommand{\inducingInputMatrix}{\mathbf{Z}} \newcommand{\inducingScalar}{u} \newcommand{\inducingVector}{\mathbf{ \inducingScalar}} \newcommand{\inducingMatrix}{\mathbf{U}} \newcommand{\inlineDiff}[2]{\text{d}#1/\text{d}#2} \newcommand{\inputDim}{q} \newcommand{\inputMatrix}{\mathbf{X}} \newcommand{\inputScalar}{x} \newcommand{\inputSpace}{\mathcal{X}} \newcommand{\inputVals}{\inputVector} \newcommand{\inputVector}{\mathbf{ \inputScalar}} \newcommand{\iterNum}{k} \newcommand{\kernel}{\kernelScalar} \newcommand{\kernelMatrix}{\mathbf{K}} \newcommand{\kernelScalar}{k} \newcommand{\kernelVector}{\mathbf{ \kernelScalar}} \newcommand{\kff}{\kernelScalar_{\mappingFunction \mappingFunction}} \newcommand{\kfu}{\kernelVector_{\mappingFunction \inducingScalar}} \newcommand{\kuf}{\kernelVector_{\inducingScalar \mappingFunction}} \newcommand{\kuu}{\kernelVector_{\inducingScalar \inducingScalar}} \newcommand{\lagrangeMultiplier}{\lambda} \newcommand{\lagrangeMultiplierMatrix}{\boldsymbol{ \Lambda}} \newcommand{\lagrangian}{L} \newcommand{\laplacianFactor}{\mathbf{ \MakeUppercase{\laplacianFactorScalar}}} \newcommand{\laplacianFactorScalar}{m} \newcommand{\laplacianFactorVector}{\mathbf{ \laplacianFactorScalar}} \newcommand{\laplacianMatrix}{\mathbf{L}} \newcommand{\laplacianScalar}{\ell} \newcommand{\laplacianVector}{\mathbf{ \ell}} \newcommand{\latentDim}{q} \newcommand{\latentDistanceMatrix}{\boldsymbol{ \Delta}} \newcommand{\latentDistanceScalar}{\delta} \newcommand{\latentDistanceVector}{\boldsymbol{ \delta}} \newcommand{\latentForce}{f} \newcommand{\latentFunction}{u} \newcommand{\latentFunctionVector}{\mathbf{ \latentFunction}} \newcommand{\latentFunctionMatrix}{\mathbf{ \MakeUppercase{\latentFunction}}} \newcommand{\latentIndex}{j} \newcommand{\latentScalar}{z} \newcommand{\latentVector}{\mathbf{ \latentScalar}} \newcommand{\latentMatrix}{\mathbf{Z}} \newcommand{\learnRate}{\eta} \newcommand{\lengthScale}{\ell} \newcommand{\rbfWidth}{\ell} \newcommand{\likelihoodBound}{\mathcal{L}} \newcommand{\likelihoodFunction}{L} \newcommand{\locationScalar}{\mu} \newcommand{\locationVector}{\boldsymbol{ \locationScalar}} \newcommand{\locationMatrix}{\mathbf{M}} \newcommand{\variance}[1]{\text{var}\left( #1 \right)} \newcommand{\mappingFunction}{f} \newcommand{\mappingFunctionMatrix}{\mathbf{F}} \newcommand{\mappingFunctionTwo}{g} \newcommand{\mappingFunctionTwoMatrix}{\mathbf{G}} \newcommand{\mappingFunctionTwoVector}{\mathbf{ \mappingFunctionTwo}} \newcommand{\mappingFunctionVector}{\mathbf{ \mappingFunction}} \newcommand{\scaleScalar}{s} \newcommand{\mappingScalar}{w} \newcommand{\mappingVector}{\mathbf{ \mappingScalar}} \newcommand{\mappingMatrix}{\mathbf{W}} \newcommand{\mappingScalarTwo}{v} \newcommand{\mappingVectorTwo}{\mathbf{ \mappingScalarTwo}} \newcommand{\mappingMatrixTwo}{\mathbf{V}} \newcommand{\maxIters}{K} \newcommand{\meanMatrix}{\mathbf{M}} \newcommand{\meanScalar}{\mu} \newcommand{\meanTwoMatrix}{\mathbf{M}} \newcommand{\meanTwoScalar}{m} \newcommand{\meanTwoVector}{\mathbf{ \meanTwoScalar}} \newcommand{\meanVector}{\boldsymbol{ \meanScalar}} \newcommand{\mrnaConcentration}{m} \newcommand{\naturalFrequency}{\omega} \newcommand{\neighborhood}[1]{\mathcal{N}\left( #1 \right)} \newcommand{\neilurl}{http://inverseprobability.com/} \newcommand{\noiseMatrix}{\boldsymbol{ E}} \newcommand{\noiseScalar}{\epsilon} \newcommand{\noiseVector}{\boldsymbol{ \epsilon}} \newcommand{\norm}[1]{\left\Vert #1 \right\Vert} \newcommand{\normalizedLaplacianMatrix}{\hat{\mathbf{L}}} \newcommand{\normalizedLaplacianScalar}{\hat{\ell}} \newcommand{\normalizedLaplacianVector}{\hat{\mathbf{ \ell}}} \newcommand{\numActive}{m} \newcommand{\numBasisFunc}{m} \newcommand{\numComponents}{m} \newcommand{\numComps}{K} \newcommand{\numData}{n} \newcommand{\numFeatures}{K} \newcommand{\numHidden}{h} \newcommand{\numInducing}{m} \newcommand{\numLayers}{\ell} \newcommand{\numNeighbors}{K} \newcommand{\numSequences}{s} \newcommand{\numSuccess}{s} \newcommand{\numTasks}{m} \newcommand{\numTime}{T} \newcommand{\numTrials}{S} \newcommand{\outputIndex}{j} \newcommand{\paramVector}{\boldsymbol{ \theta}} \newcommand{\parameterMatrix}{\boldsymbol{ \Theta}} \newcommand{\parameterScalar}{\theta} \newcommand{\parameterVector}{\boldsymbol{ \parameterScalar}} \newcommand{\partDiff}[2]{\frac{\partial#1}{\partial#2}} \newcommand{\precisionScalar}{j} \newcommand{\precisionVector}{\mathbf{ \precisionScalar}} \newcommand{\precisionMatrix}{\mathbf{J}} \newcommand{\pseudotargetScalar}{\widetilde{y}} \newcommand{\pseudotargetVector}{\mathbf{ \pseudotargetScalar}} \newcommand{\pseudotargetMatrix}{\mathbf{ \widetilde{Y}}} \newcommand{\rank}[1]{\text{rank}\left(#1\right)} \newcommand{\rayleighDist}[2]{\mathcal{R}\left(#1|#2\right)} \newcommand{\rayleighSamp}[1]{\mathcal{R}\left(#1\right)} \newcommand{\responsibility}{r} \newcommand{\rotationScalar}{r} \newcommand{\rotationVector}{\mathbf{ \rotationScalar}} \newcommand{\rotationMatrix}{\mathbf{R}} \newcommand{\sampleCovScalar}{s} \newcommand{\sampleCovVector}{\mathbf{ \sampleCovScalar}} \newcommand{\sampleCovMatrix}{\mathbf{s}} \newcommand{\scalarProduct}[2]{\left\langle{#1},{#2}\right\rangle} \newcommand{\sign}[1]{\text{sign}\left(#1\right)} \newcommand{\sigmoid}[1]{\sigma\left(#1\right)} \newcommand{\singularvalue}{\ell} \newcommand{\singularvalueMatrix}{\mathbf{L}} \newcommand{\singularvalueVector}{\mathbf{l}} \newcommand{\sorth}{\mathbf{u}} \newcommand{\spar}{\lambda} \newcommand{\trace}[1]{\text{tr}\left(#1\right)} \newcommand{\BasalRate}{B} \newcommand{\DampingCoefficient}{C} \newcommand{\DecayRate}{D} \newcommand{\Displacement}{X} \newcommand{\LatentForce}{F} \newcommand{\Mass}{M} \newcommand{\Sensitivity}{S} \newcommand{\basalRate}{b} \newcommand{\dampingCoefficient}{c} \newcommand{\mass}{m} \newcommand{\sensitivity}{s} \newcommand{\springScalar}{\kappa} \newcommand{\springVector}{\boldsymbol{ \kappa}} \newcommand{\springMatrix}{\boldsymbol{ \mathcal{K}}} \newcommand{\tfConcentration}{p} \newcommand{\tfDecayRate}{\delta} \newcommand{\tfMrnaConcentration}{f} \newcommand{\tfVector}{\mathbf{ \tfConcentration}} \newcommand{\velocity}{v} \newcommand{\sufficientStatsScalar}{g} \newcommand{\sufficientStatsVector}{\mathbf{ \sufficientStatsScalar}} \newcommand{\sufficientStatsMatrix}{\mathbf{G}} \newcommand{\switchScalar}{s} \newcommand{\switchVector}{\mathbf{ \switchScalar}} \newcommand{\switchMatrix}{\mathbf{S}} \newcommand{\tr}[1]{\text{tr}\left(#1\right)} \newcommand{\loneNorm}[1]{\left\Vert #1 \right\Vert_1} \newcommand{\ltwoNorm}[1]{\left\Vert #1 \right\Vert_2} \newcommand{\onenorm}[1]{\left\vert#1\right\vert_1} \newcommand{\twonorm}[1]{\left\Vert #1 \right\Vert} \newcommand{\vScalar}{v} \newcommand{\vVector}{\mathbf{v}} \newcommand{\vMatrix}{\mathbf{V}} \newcommand{\varianceDist}[2]{\text{var}_{#2}\left( #1 \right)} % Already defined by latex %\newcommand{\vec}{#1:} \newcommand{\vecb}[1]{\left(#1\right):} \newcommand{\weightScalar}{w} \newcommand{\weightVector}{\mathbf{ \weightScalar}} \newcommand{\weightMatrix}{\mathbf{W}} \newcommand{\weightedAdjacencyMatrix}{\mathbf{A}} \newcommand{\weightedAdjacencyScalar}{a} \newcommand{\weightedAdjacencyVector}{\mathbf{ \weightedAdjacencyScalar}} \newcommand{\onesVector}{\mathbf{1}} \newcommand{\zerosVector}{\mathbf{0}} \]

AI and Data Science

Systems, Data Science, Biology, Medicine

Neil D. Lawrence

Autumn Data Science School, Cambridge

What is Machine Learning?

What is Machine Learning?

\[ \text{data} + \text{model} \stackrel{\text{compute}}{\rightarrow} \text{prediction}\]

  • data : observations, could be actively or passively acquired (meta-data).
  • model : assumptions, based on previous experience (other data! transfer learning etc), or beliefs about the regularities of the universe. Inductive bias.
  • prediction : an action to be taken or a categorization or a quality score.

What is Machine Learning?

\[\text{data} + \text{model} \stackrel{\text{compute}}{\rightarrow} \text{prediction}\]

  • To combine data with a model need:
  • a prediction function \(\mappingFunction (\cdot)\) includes our beliefs about the regularities of the universe
  • an objective function \(\errorFunction (\cdot)\) defines the cost of misprediction.

Machine Learning

  • Driver of two different domains:
    1. Data Science: arises from the fact that we now capture data by happenstance.
    2. Artificial Intelligence: emulation of human behaviour.
  • Connection: Internet of Things

Machine Learning

  • Driver of two different domains:
    1. Data Science: arises from the fact that we now capture data by happenstance.
    2. Artificial Intelligence: emulation of human behaviour.
  • Connection: Internet of Things

Machine Learning

  • Driver of two different domains:
    1. Data Science: arises from the fact that we now capture data by happenstance.
    2. Artificial Intelligence: emulation of human behaviour.
  • Connection: Internet of People

Convention for the Protection of Individuals with regard to Automatic Processing of Personal Data (1981/1/28)

What does Machine Learning do?

  • ML Automates through Data
    • Strongly related to statistics.
    • Field underpins revolution in data science and AI
  • With AI:
    • logic, robotics, computer vision, speech
  • With Data Science:
    • databases, data mining, statistics, visualization

Supply Chain

Cromford

Deep Freeze

Deep Freeze

Machine Learning in Supply Chain

  • Supply chain: Large Automated Decision Making Network
  • Major Challenge:
    • We have a mechanistic understanding of supply chain.
    • Machine learning is a data driven technology.

Deploying Artificial Intelligence

  • Challenges in deploying AI.
  • Currently this is in the form of “machine learning systems”

Internet of People

  • Fog computing: barrier between cloud and device blurring.
    • Computing on the Edge
  • Complex feedback between algorithm and implementation

Deploying ML in Real World: Machine Learning Systems Design

  • Major new challenge for systems designers.
  • Internet of Intelligence but currently:
    • AI systems are fragile

Data Science Africa is a bottom up initiative for capacity building in data science, machine learning and AI on the African continent

Example: Prediction of Malaria Incidence in Uganda

  • Work with Ricardo Andrade Pacheco, John Quinn and Martin Mubaganzi (Makerere University, Uganda)
  • See AI-DEV Group.

Malaria Prediction in Uganda

(Andrade-Pacheco et al., 2014; Mubangizi et al., 2014)

Tororo District

Malaria Prediction in Nagongera (Sentinel Site)

Mubende District

Malaria Prediction in Uganda

GP School at Makerere

Kabarole District

Early Warning System

Early Warning Systems

Conclusion

Conclusion

  • Separation between machine learning and AI

  • Real world challenges such as matching supply to demand

  • Example of predicting disease via Gaussian processes

Thanks!

References

Andrade-Pacheco, R., Mubangizi, M., Quinn, J., Lawrence, N.D., 2014. Consistent mapping of government malaria records across a changing territory delimitation. Malaria Journal 13. https://doi.org/10.1186/1475-2875-13-S1-P5

Mubangizi, M., Andrade-Pacheco, R., Smith, M.T., Quinn, J., Lawrence, N.D., 2014. Malaria surveillance with multiple data sources using Gaussian process models, in: 1st International Conference on the Use of Mobile ICT in Africa.